水溶液中四种脱氧核苷酸与水合铀酰离子相互作用的理论计算
Theoretical Calculations of Interaction between Four Deoxyribonucleotides and Hydrated Uranyl Ion in Aqueous Solution
作者单位E-mail
牟永晓 温州医科大学药学院, 温州 325035  
曹建平 温州医科大学药学院, 温州 325035  
陈媛媛 温州医科大学药学院, 温州 325035  
卫涛 温州医科大学药学院, 温州 325035  
王朝杰 温州医科大学药学院, 温州 325035 chjwang@wmu.edu.cn 
摘要: 运用密度泛函理论(DFT)方法M06-2X,在相对论有效势基组水平下研究水溶液中水合铀酰脱氧核苷酸配合物[UO2(dNMP)(H2O)3]2+(dNMP=单磷酸脱氧核苷酸)的几何结构、能量和电子结构等性质,采用极化连续介质模型考虑水溶剂环境。结果表明,除了脱氧胸苷酸,其它脱氧核苷酸均以磷酸基团P=O键与铀原子形成的配位结构最稳定,4类配离子U=O键长值较接近,但配位键键长有所不同。脱氧腺苷酸配离子的总结合能最大,但脱氧腺苷酸变形能最小。振动光谱分析发现U=O键和P=O键伸缩振动频率均发生红移,脱氧腺苷酸配离子的变化程度最大。电子密度拓扑分析表明U-dNMP键和U-OH2键具有离子键性质。电荷转移分析显示配体片段向铀酰离子发生了电子转移,脱氧腺苷酸配离子中配体转移的电荷数最多。轨道成分分析表明,高占据轨道贡献主要来自脱氧核苷酸配体π轨道,而低阶空轨道基本是U的5f轨道组成,脱氧鸟苷酸配离子的HOMO-LUMO能级差最小。
关键词: 铀酰离子  脱氧核苷酸  密度泛函理论  结合能  电子结构
基金项目: 国家自然科学基金(No.21177098)和浙江省自然科学基金(No.LY16B070006)资助项目。
Abstract: The geometric structures, energetics and electronic structures of[UO2(dNMP)(H2O)3]2+ (dNMP=deoxy-nucleotide monophosphate) in aqueous phase have been studied using density functional theory (DFT) method M06-2X with RLC ECP and ECP60MWB-SEG basis sets. Solvent effects of water was simulated by the polarized continuum model. The results showed that the most stable coordination uranyl ions formed by P=O bond of the phosphate group in dNMP, except the dTMP coordination ion. The bond lengths of U=O in four coordination uranyl ions were almost the same, but the coordination bond lengths were significantly different. The deoxyadenosine monophosphate (dAMP) coordination ion had the maximum binding energy among all the coordination ions, however, the coordinated dAMP possessed the smallest deformation energy. Concerning the differences in the calculation results of the two basis sets, the U=O bond lengths calculated by the ECP60MWB-SEG basis set were slightly longer than those obtained by the RLC ECP basis set, while the lengths of the coordination bonds showed opposite tendency. Additionally, the binding energy values calculated at the ECP60MWB-SEG basis set level were more negative than the RLC ECP basis set. The stretching vibrational frequencies of the U=O and P=O bonds exhibited a general red-shift, and the stretching vibrational frequencies of dAMP coordination ion decreased significantly. The topological analysis of electron density indicated that the coordination bond showed ionic character. It revealed that the charge transfer was from ligands to uranyl ion during the coordination process, and the maximum number of charge transferred by ligands in the dAMP coordination ion. Moreover, the molecular orbital composition demonstrated that the high-lying occupied molecular orbitals were actually contributed by π orbital of dNMP ligands, while the 5f atomic orbitals of uranium center mainly contributed to the low-lying unoccupied molecular orbitals. The frontier orbitals energy gap of deoxyguanosine monophosphate (dGMP) coordination ion was much smaller than any other coordination ions.
Keywords: uranyl ion  deoxynucleotide monophosphate  density functional theory  binding energies  electronic structures
投稿时间:2019-04-26 修订日期:2019-06-10
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牟永晓,曹建平,陈媛媛,卫涛,王朝杰.水溶液中四种脱氧核苷酸与水合铀酰离子相互作用的理论计算[J].无机化学学报,2019,35(9):1609-1618.
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